Stucture of Proteins

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The most basic level of protein structure, called the primary structure, is the linear sequence of amino acids. Different sequences of the acids along a chain, however, affect the structure of a protein molecule in different ways. Forces such as hydrogen bonds, disulfide bridges, attractions between positive and negative charges, and hydrophobic (“water-fearing”) and hydrophilic (“water-loving”) linkages cause a protein molecule to coil or fold into a secondary structure, examples of which are the so-called alpha helix and the beta pleated sheet. When forces cause the molecule to become even more compact, as in globular proteins, a tertiary protein structure is formed. When a protein is made up of more than one polypeptide chain, as in hemoglobin and some enzymes, it is said to have a quaternary structure.

INTERACTION WITH OTHER PROTEINS

Polypeptide chains are sequenced and coiled in such a way that the hydrophobic amino acids usually face inward, giving the molecule stability, and the hydrophilic amino acids face outward, where they are free to interact with other compounds and especially other proteins. Globular proteins, in particular, can join with a specific compound such as a vitamin derivative and form a coenzyme (see Enzyme), or join with a specific protein and form an assembly of proteins needed for cell chemistry or structure.

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